EGI Community Forum 2015

Session

Tutorial: Running Chipster in the EGI FedCloud

11 Nov 2015, 11:00

Villa Romanazzi Carducci

Conveners

Tutorial: Running Chipster in the EGI FedCloud

• Kimmo Mattila (CSC)
• Diego Scardaci (EGI.eu/INFN)

25. Running Chipster data analysis platform in EGI Federated Cloud

Kimmo Mattila (CSC)

11/11/2015, 11:00

Tutorial

Chipster is a bioinformatics environment that includes over 350 analysis tools for high-throughput sequencing and microarray data. The tools are complemented with a comprehensive collection of reference datasets, such as genome indexes for the Tophat and BWA aligners. The tools can be used on command line or via an intuitive GUI, which offers also interactive visualizations and workflow...