Workshops on e-Science Workflows

Session

Workflow Systems and Requirements - Presentations

5

10 Feb 2012, 09:05

Budapest

Conveners

Workflow Systems and Requirements - Presentations

• Gergely Sipos (EGI.EU)
• Richard McLennan (EGI.EU)

Description

Position papers from workflow user communities and workflow provider/developer communities are delivered in this session, each lasting approximately 15 minutes.

2. Biodiversity Virtual e-Laboratory (BioVeL): Robust biodiversity workflows running on the GRID

Dr Giacinto Donvito (INFN)

10/02/2012, 09:05

Biovel addresses the needs of biologists and environmental scientists by offering a series of robust and reliable web services based workflows that can be managed with the myGrid suite of tools: Taverna, BioCatalogue and myExperiment. The project proposes best practice and efficient workflows for commonly executed analyses in ecology, taxonomy, phylogenetics and metagenomics, with underlying...

4. Globus-based Technologies for Supporting Advanced e-Science Workflows – An IGE Perspective

Dr Ioan Lucian Muntean (UTC)

10/02/2012, 09:20

The IGE project supports the adoption of Globus Toolkit in Europe in many different ways, such as by providing Globus-based technologies to the EGI, PRACE, and other infrastructure providers in Europe. This presentation will outline the capabilities (technologies) specific to or based on the Globus Toolkit 5 of potential interest to scientific workflows' developers and their users (GRAM5,...

5. Agile Analysis Framework for Complex Iterations and Data Integration

Kristian Ovaska

10/02/2012, 09:35

Anduril (anduril.org) is an open source Java based workflow engine that has been designed especially for the scientific data analysis and method development. Special emphasis has been spent on the simplification of testing, programming, reporting and refactoring of the framework itself, components and workflows. Anduril provides means for the language independent integration of programs and...

6. myExperiment 2.0 - preserving digital research objects using the Wf4Ever Architecture

Stian Soiland-Reyes (myExperiment)

10/02/2012, 09:50

Increasingly, published research is based on digital artefacts such as scientific workflows, web services and public data sets. myExperiment is a social website for sharing workflows and data, used by scientists of different domains such as bioinformatics, chemistry and astrophysics. myExperiment lets scientists build a structured aggregation or pack of the artefacts supporting a...

3. SHIWA technology to enable the integration and collaboration of various workflow systems used in Europe

Peter Kacsuk (MTA SZTAKI)

10/02/2012, 10:05

User communities from all around Europe use many kinds of different workflow languages. Communities develop their workflows using one of the workflow engines. Workflow development, testing and validation are a time consuming process and it requires specific expertise. These limit the number of available workflows, so it is important to reuse them. Workflows developed for one workflow system is...

0. A flexible zone model for data privacy and confidentiality in medical research

Dr Wolfgang Kuchinke (Heinrich-Heine University Duesseldorf)

10/02/2012, 10:20

Increasing amounts of data is exchanged, processed and stored in medical research, linking healthcare registers, genetic and cancer databases, and clinical study databases with biobank repositories, imaging repositories and other data sources. But the legal and ethical implications of such far-reaching data access and data merging are often only taken insufficiently into consideration. Privacy...