LifeWatch progress meeting

2 Sept 2015, 11:00 → 4 Sept 2015, 13:00 Europe/Amsterdam

Instituto de Física de Cantabria

This is an official EGI CC-LifeWatch meeting, that will take place at IFCA (logistic details will be provided here asap) in Santander.

1. Send a mail to us (Jesus / Fernando) to confirm that you will participate, your contribution and if you need any kind of support. We hope to cover lunch, dinner, coffee breaks, but eventually could cover also travel and accomodation if known in advance. Please let us know asap.
2. How to get to IFCA: https://grid.ifca.es/wiki/Where
3. If you need a (nice) hotel reservation at a (nice) price: contact congresossantander[at]viajeseci.es indicating "LifeWatch meeting".
4. Remote connection: we will setup it if demanded.

Wednesday, 2 September

Pattern recognition tools for citizen science

2h technical session oriented to present and analyze the different existing platforms, implementation in the cloud, etc.
Objective: first draft version of deliverable D4.3 Integration of assisted pattern recognition tools, and deployment of the test tools in FedCloud

Convener: Francisco Sanz (BIFI)

slides

• Brewing_Deep_Networks_With_Caffe.pptx
• caffe.pdf
• CITIZEN-SCIENCE-INTRO-V1-Advances_in_the_EGI-LW-CC-SANTANDER.pdf

Overview and organization

We will review the Competence Center tasks and deliverables, and organize in flexible way. Workgroups will be defined as needed.

Convener: Jesus Marco de Lucas (CSIC)

1 Welcome, Overview and Organization

Speaker: Jesus Marco de Lucas (CSIC)

2 Lifewatch general status

Speaker: Juan Miguel Gonzalez-Aranda (Spanish Ministry of Economy and Competitiveness-MINECO)

Slides GONZALEZ_ARANDA_JUAN_MIGUEL_LifeWatch_Context_Update_and_Wrap_up_Context_EGI_LW_Competence_Center_Meeting_Santander_Sept_2015.ppt GONZALEZ_ARANDA_JUAN_MIGUEL_LifeWatch_Context_Update_and_Wrap_up_Context_EGI_LW_Competence_Center_Meeting_Santander_Sept_2015_[Sólo_lectura]_[Modo_de_compatibilidad].pdf

FedCloud status, resources, and support

The current status of FedCloud will be briefly reviewed, a list of open questions and plans, plus "basic" needs for support will be prepared. An analysis of available resources and expected needs will be started.

Convener: Dr Enol Fernandez (EGI.eu)

3 FedCloud introduction

Slides EGI_FedCloud.pdf

Summary of VRE (marine and non-marine) needs and initial analysis for support on FedCloud

A summary of the existing info on marine VRE and the new info on non-marine VRE will be analyzed and the connection with the support in FedCloud and with the different tasks in the LifeWatch CC established

Convener: Klaas Deneudt

4 Terrestrial&Freshwater

Speaker: Dr Julien Radoux (Université catholique de Louvain)

Slides T&F_VRE_[Sólo_lectura].pdf

5 Marine VRE

Speaker: Klaas Deneudt (VLIZ)

Slides Summary_of_VREmarineVRE_Requirements.pdf Summary_of_VREmarineVRE_Requirements.pptx

6 VRE water management

Speaker: Mr AJ (CITIC)

Slides SWIRL_-_EGICC_2015.09.02.pdf

Services and Outreach

Discuss from a perspective of service to users Analyze what can be presented already in coming meetings (in particular in Rome by end of September)

Convener: nicola fiore

7 Service, Putreach

Speaker: NICOLA FIORE (LifeWatch Italy)

Slides LIFEWATCH_SANTANDER-VRE-Invasive.pdf LIFEWATCH_SANTANDER.pptx

8 Ecology Meeting at Rome - Booth, activities

Speakers: Fernando Aguilar (CSIC), NICOLA FIORE (LifeWatch Italy)

Dinner

9 Dinner

Thursday, 3 September

Data flow handling from instrumentation to repositories

The status of current examples of integration and challenges found will be presented.

Conveners: Fernando Aguilar (CSIC), Joram Declerck

10 CdP Data Repository test

Speaker: Fernando Aguilar (CSIC)

Slides CDP_Data_flow.pdf

11 microCT vLab

Speaker: Mrs Emmanouela Panteri (Hellenic Centre for Marine Research)

Slides Panteri_Emmanouela_MicroCT.pdf

12 VLIZ data flow

Slides LW_EGI_-SensorsData.pdf LW_EGI_-SensorsData.pptx

13 Discussion

11:00 Coffe Break

Support to use of R and Python

Convener: Fernando Aguilar (CSIC)

14 RvLab - Lifewatch Greece

Speaker: Emmanouela Panteri (Hellenic Centre for Marine Research)

Slides Christos_Arvanitidis_-_RvLAB.pdf

Video Demo_for_Mobile_Application.m4v

15 iPython Notebook Uses - R over powerPC

Speaker: Ms Aida Palacio (IFCA)

Slides RIPythonCCLifewatch.pdf

16 R applications at VLIZ

Speaker: Francisco Hernandez (Flanders Marine Institute)

Slides Lifewatch_EGI_tools.pdf Lifewatch_EGI_tools.pptx

17 Open discussion

Speakers: Fernando Aguilar (CSIC), Jesus Marco de Lucas (CSIC)

Lunch

Workflows: Galaxy and TRUFA

Detailed analysis on these two genomic workflows and how to access them/support them

Conveners: Dr Ignacio Blanquer (UPVLC), Jean-Marc Frigerio (INRA)

18 Galaxy

Slides Jean-Marc_INRA-UPV-LIFEWATCH_CC.pdf

19 TRUFA

Slides TRUFA.pdf

20 Discussion

Network of Life

Analysis of the implementation of this initiative (follow-up of Lisbon session)

Convener: Mr Miguel Porto (CIBIO)

21 Network of Life - Introduction, status, future...

Speaker: Mr Miguel Porto (CIBIO)

Diapositivas network_of_life_presentation.zip

22 Discussion - Problems, solutions, implenentation of new ideas

Speaker: Mr Miguel Porto (CIBIO)

NEW INITIATIVES

Brainstorming on ideas for new initiatives Potential topics: -Whats open in WP2014-2015? --FET-OPEN - NOVEL IDEAS FOR RADICALLY NEW TECHNOLOGIES --CALL FOR MAKING SCIENCE EDUCATION AND CAREERS ATTRACTIVE FOR YOUNG PEOPLE --CALL FOR INTEGRATING SOCIETY IN SCIENCE AND INNOVATION
-Intro to WP 2016-2017 -Marie Curie Fellowships -Bi-lateral projects
-New Proposal(s) for implementation of IRVNE -New ideas to map knowledge: IRVNE-KNOWS

Convener: Jesus Marco de Lucas (CSIC)

Dinner

23 Dinner

Speaker: Fernando Aguilar (CSIC)

Friday, 4 September

Update of deliverables and Plans

Review status of all internal deliverables
Plans for EGI Conf in Bari

Convener: Jesus Marco de Lucas (CSIC)

slides Wrap-up.pdf